Testing Pipeline Generality
Testing the fragility of the MS2 pipeline.
Tagged "tutorial"
A Pipeline for Segmenting MS2 Confocal Data
This is a tutorial on how to approach analyzing MS2 confocal data using Python.
HMM Part 1
Learning about Hidden Markov Modelling (HMM)
Classes and Objects
Classes are fun!
IDR Part 1: Parsing a GFF File
Parsing a GFF file in Python using classes.
Image Analysis 1 (Jupyter): Slicing, Filters and Sliders 1
Starting to explore image analysis by learning how to slice a stack, apply filters, and create sliders.
Image Analysis 1: Slicing, Filters and Sliders 1
Starting to explore image analysis by learning how to slice a stack, apply filters, and create sliders.
Colors in matplotlib
Exploring color in mapplotlib!
Plotting with matplotlib
We all explore matplotlib together!
Intro to CZI files Part 1
This post explores how to set up your enviroment for doing confocal image analyis in Python.
Intro to CZI files Part 2
Reading CZI files with Python.
Building a Hugo Website
This tutorial acts as a guide for creating static websites with Hugo.